Class jalview.gui.AlignViewportTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testDeregisterMapping_onCloseView | 0.101s | passed |
| testDeregisterMapping_withNoReference | 0.049s | passed |
| testDeregisterMapping_withReference | 0.094s | passed |
| testGetConsensusSeq | 0.094s | passed |
| testHideRevealSequences | 0s | passed |
| testSetGetHasSearchResults | 0.051s | passed |
| testSetGlobalColourScheme | 0.059s | passed |
| testSetSelectionGroup | 0.075s | passed |
| testShowOrDontShowOccupancy | 0.168s | passed |
| testUpdateConservation_qualityOnly | 0.115s | passed |
Standard output
File format identified as Fasta File format identified as Fasta File format identified as Fasta File format identified as Fasta File format identified as Fasta registry.getSupportedServices: [MSAprobsWS, DisemblWS, TcoffeeWS, RNAalifoldWS, MafftWS, IUPredWS, GlobPlotWS, ProbconsWS, AAConWS, JronnWS, ClustalWS, MuscleWS, ClustalOWS, GLprobsWS] File format identified as Fasta File format identified as Fasta File format identified as Fasta File format identified as Fasta registry.getSupportedServices: [MSAprobsWS, DisemblWS, TcoffeeWS, RNAalifoldWS, MafftWS, IUPredWS, GlobPlotWS, ProbconsWS, AAConWS, JronnWS, ClustalWS, MuscleWS, ClustalOWS, GLprobsWS] File format identified as Fasta Attempting to connect with MafftWS... File format identified as Fasta Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@ff7b673 File format identified as Fasta
Standard error
DEBUG - A MsaWS service called Muscle Multiple Protein Sequence Alignment exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS DEBUG - A MsaWS service called MAFFT Multiple Sequence Alignment exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/MafftWS DEBUG - A MsaWS service called ClustalW Multiple Sequence Alignment exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS DEBUG - A SecStrPred service called JPred Secondary Structure Prediction exists at http://www.compbio.dundee.ac.uk/JalviewWS/services/jpred DEBUG - No service endpoints to use for service discovery. DEBUG - Constructing news reader. Invalid or corrupt date in property 'JALVIEW_NEWS_RSS_LASTMODIFIED' : value was 'Apr 23, 2014 2:53:26 PM' Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change DEBUG - Filechooser init thread finished. Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Assuming project file with TEST is compatible with Jalview version 2.8.1 DEBUG - Aborting 1 JABAWS discovery threads. DEBUG - Setting viewport's sequence set id : 1133497507 DEBUG - Scanning news items: newsnew=false and lastDate is null DEBUG - Will show jalview news automatically DEBUG - Completed construction of reader. DEBUG - Completed news thread. Warning - overwriting a sequenceSetId for a viewport! DEBUG - Old discovery thread has finished. Jul 02, 2023 10:11:56 AM compbio.ws.client.Jws2Client connectToRegistry INFO: Connected to RegistryWS successfully! DEBUG - Exception downloading identifiers.org datahttps://www.jalview.org/services/identifiers DEBUG - Displaying news. DEBUG - Scanning news items: newsnew=false and lastDate is null DEBUG - Will show jalview news automatically DEBUG - Completed construction of reader. Jul 02, 2023 10:11:57 AM compbio.ws.client.Jws2Client connectToRegistry INFO: Connected to RegistryWS successfully! DEBUG - Completed news thread. DEBUG - Displaying news. Jul 02, 2023 10:11:57 AM compbio.ws.client.Jws2Client connect INFO: Connected successfully!